Package index

Helper Functions for Rice Disease Simulations

Run seir() using pre-defined models

bacterial_blight() brown_spot() leaf_blast() sheath_blight() tungro() modified_kim_leaf_blast() modified_kim_sheath_blight() leaf_rust() s_tritici_blotch() bb() bs() lb() sb() tg() mk_lb() mk_sb() lr() brown_rust() stb()

Rice and Wheat Disease Models

Helper Functions for Multiple Simulations

run_epicrop_model()

Run an epicrop disease model across emergence dates and/or locations

build_epicrop_emergence()

Build emergence dates from year × month_day combinations

audpc_dt()

Extract AUDPC Summary as data.table

SEIR

A susceptible-exposed-infectious-removed (SEIR) model and the main function that drives {epicrop}

seir()

Susceptible-Exposed-Infectious-Removed (SEIR) Model Framework with Lesion Expansion

Weather Data

Functions for fetching and formatting weather data for use in {epicrop}

get_wth()

Get Weather Data for Modelling Disease

fetch_epicrop_weather_list()

Fetch weather once (single or multiple locations) and split by calendar year

format_wth()

Format Weather Data for Use in seir() Simulations

Miscellaneous

Other functions

get_audpc()

Get AUDPC from epicrop.sim Object